Course Project

There are four topics to choose from for your final project. Read the instructions in each topic. You need to submit the following by Midnight, Dec 20, 2021. 

1. A 6-8 page project report (yourlastname_report.pdf) with description of the implementation and your experiments, details of your results and answers to the questions. Remember to include a title page, which contains the title of your project, your name and your student number.

2. Your source code with detailed documentation and a readme file with instruction of running your program.

3. In a separate file/folder, submit the results and necessary intermediate files which might be needed for grading purpose.

4. All the files should be submitted in one zip file.

Note: You might still use your grace period for 3 extra days till 12/23 but you might receive an incomplete score first. If you need your score early for graduation, please contact me and I can arrange an early submission and consider the difference in grading.

Project Topics

• Topic I: Restricted-mismatch kernel for protein classification
• Topic II: Aligning short reads with mismatches and junctions
• Topic III: Parsimony analysis for population genetics
• Topic IV: Protein secondary structure prediction